trouble with electronic payments - reconciling

Hi All,

I have just commenced wth electronic direct payments which we are paying through our credit card. I have set everything up s per instructons and I am having no probems with preparing electcronic payments and sending and approving the payments-this is all working. 

My issue is with my GL account and clearing /bank accounts as I am ending  up wth a debit to my credit card bank account and unsure where I allocate this amount too. When preparing the payment this clears down the creditors and double entry is correct in the clearing account yet I am either left with a debit to our main bank account or credit card account.

Can someone please assist?

TIA - KDF