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I have an employee who borrowed from me personally $100 and want to pay me back over two pays at $50 per pay.
Can you advise how I do this?
If this is a purely personal loan to the employee from you - then it should not appear anywhere in you business accounts.
If it was a loan from the business then you should set up a loan account and then the deduction linked to the loan account for the repayments.
Check out the support notes:
I would recommend setting up a deduction that you can use for the next two periods. Then once it has been paid you just unlink the deduction form that employees card.
To help with setting up a deduction please have a look at this support article, Deductions (click here to open in a new tab).