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Have you invited your Tax Accountant into your MYOB file.
Normally the components of a BAS are -
GST Collected GST Paid PAYG - Withholding PAYG - Instalment
In reverse order,
PAYG - Instalment is Company Tax paid by the Company based on the taxable profit of last year.
If your Company had a loss, there would be no PAYG - I.
PAYG - Withholding is tax deducted from the gross Salary of an employee by the Company
I understand you are the only employee in the Company
Lets say your Salary for FY17 is $80,000 and in round terms tax for the year is $20,000
W1 for on each quarterly BAS would be $20,000 and W2 would be $5,000
GST Collected and GST Paid are calculated once you register for GST.
If a Company pays the Personal Income Tax or Instalment of the Director then that would be a debit to your Directors Loan Account.
The yearly Financial Statement if the Company has a Profit (Taxable Income) should have a Current Liability titled Income Tax Payable FYxx.
Would suggest that you have your Tax Accountant allocate for you and then follow that procedure in the future.
I often have my clients watch in the cloud as I work.
Hope this helps.