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my question is if payroll year end is on the Friday 29.06.19 and payroll is not processed till the 01.07.19 will this fortnightly pay be included in the 2018-2019 payroll year?
The date the payrun is paid determines which financial year (and month) it is included in. A June payrun which is paid in July is part of the new financial year, this includes PAYGW and super amounts.
Hope this helps