Hi MPNH,
Welcome to our Community Forum. At present, our application doesn't facilitate refunds in electronic payment batches. Your best course of action would be to process the refunds into an electronic clearing account or establish a new clearing account. Then, create a journal entry to shift the values from the electronic clearing account to your preferred bank account.
For better visibility to our development team, consider sharing this on the Ideas Exchange board. If you need more assistance, don't hesitate to ask.
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Thanks,
Genreve