I have 6 transactions (includes 3 reversals) sitting in the Electronic Payment Register relating to 3 pays for the same employee that I’m not sure how to clear without affecting the bank reconciliations.

Initially I made a mistake when setting up the Salary Sacrifice for one employee. It was set up as a positive rather than negative amount for 3 pays. The wages have been paid electronically to the employee for the incorrect amount. E.G. Salary Sacrifice was added to gross wage instead of being deducted.
So that the amounts would be reported correctly to the ATO, I reversed the incorrect pays and then ran again with the correct amount.
My question is;
- How can I clear the electronic payments (they don’t cancel each other out due to the different amounts) without affecting the bank reconciliations?
- How do I account for the overpayment of wages? I have read the support notes but I can’t work out how to apply it to this error.
Your help would be much appreciated.