I only have 2 employees. Both get SGC as well as super sacrifice. The payroll transaction puts the SGC amounts into Super Payable liability account and salary sacrifice amounts into Payroll Deductions liability account. Prior to using the pay super from MYOB function I would make the payment manually to the Small Business Clearing House from my bank account then at month end go to the payment transaction (from the bank feed) and allocate the correct amounts to Super Payable and Payroll Deductions. This returned the Super Payable and Payroll Deductions liability accounts to zero.
Since paying super from MYOB I now have a transaction appearing in each of the accounts that MYOB is automatically entering - it is debiting the Super Payable and Payroll Deductions accounts with the correct amounts. However, I still have my bank transaction to process/allocate. When I allocate as before it also debits those accounts, means the amounts are being double counted.
How do I fix this?