Hi TachGrieve
Thanks for your post. If the payroll transactions are not appearing in Bank transactions>>Match transactions, go to Banking>>Find transactions>>locate a payroll transaction and click on the reference no to open. Check the account selected in the Bank account field is the correct bank account.
If it is the electronic clearing account you will need to process the electronic payment in Prepare electronic payments. You don't need to upload the bank file to your bank if employees have already been paid.
If the bank account is the correct bank account, go to Reconcile accounts and make sure those pay transactions are not ticked. If they are ticked, untick them then go back to Bank transactions where they will appear for matching.
Let me know how you go.
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