Reimbursement of journal amounts

Is there a way to reimburse amounts processed via a journal entry against sales? 

Our credit card feeds are loaded via a journal and there are costs which are incurred via these cards that need to be on-charged to clients.

We have job codes allocated to each of our projects, however only purchase invoices are appearing in the reimburse tab when we go to raise an invoice, none of the journal lines which have the code against then are showing.