Hi JOSIE
If pay transactions are appearing in the Prepare electronic payments window it means the Payment method in the employee card is set as Electronic. This posts the net amount to the electronic clearing account instead of the bank account to allow you to create a bank file for bulk payment.
You will need to process the Prepare electronic payment and match the electronic payment transaction to the bank feed transaction.
These Help Articles have detailed information:
Why are employee pays missing in bank reconciliation
Set up electronic payments
Making electronic payments
When setting up electronic payments, the Bank code is the 3 letter code for your bank, ie, NAB, ANZ, CBA.
Please let us know if you need further help.
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