Can I use MYOB Pay Super for one employee only while continuing to use a third-party clearing house for others until 30 June 2026?

AttachmentsHi MYOB Community,

We are currently preparing for the upcoming superannuation changes and are evaluating whether to use MYOB Pay Super going forward.

Before transitioning all employees, I would like to test the process by making a super contribution for just one employee through MYOB Pay Super to better understand the workflow and requirements.

At the same time, we would continue processing super contributions for our remaining employees through our existing third-party clearing house before 30 June 2026.

Could you please advise:

Is it possible to use MYOB Pay Super for only one employee while continuing to use another clearing house for other employees during the transition period?

Would this have any impact on ATO reporting, contribution tracking, or compliance obligations? For example, could this create any issues with how super payments are recognised as completed?

Could someone please explain the end-to-end process of using MYOB Pay Super?

- How are super payments created and authorised?

- How are the funds collected from our business bank account?

- How are the funds then distributed to the individual employees' super funds?

- Is there a Virtual Bank Account (VBA) or similar intermediary account involved?

Are there any common issues or setup requirements that we should be aware of before making our first payment through MYOB Pay Super?

Any guidance would be greatly appreciated.

Many thanks. 

Tracy