Hi SuFish,
You’ve got it! You can definitely keep paying your contractors’ invoices through Accounts Payable. Since contractors shouldn’t be reported via STP, set them up as an “employee” with an employment basis of “Other (Not Reported)”. This keeps them out of STP while still letting you pay their super through Pay Super.
From there, create a separate $0 pay run that only includes their super contribution, then pay and authorise the super via Pay Super. Here’s a link you can check out for more details on paying super for contractors. However, it’s always worth checking in with your accountant or the ATO so you’re sure everything’s set up just right for your contractor arrangements.
Cheers,
Princess