Hi endtop
Thanks for your post. When you report pay runs through STP, the ATO take the YTD amounts from those reports and send to employee myGov accounts. Each pay run report overrides the previous one so the YTD amounts are always up-to-date in myGov accounts.
The YTD verification report and Summary of payments reports in the EOFY finalisation tab pull the YTD amounts from the employee card>>Pay History and filter by the ATO reporting categories. When you finalise employees the Summary of payments reports are sent to the ATO and set as the final figures for the year so replace previously reported amounts.
This means that you can see a difference between the YTD verification report and what's in myGov accounts prior to finalisation.
This post, MYOB Business/Essentials reports don't match STP reports, has detailed information to assist with reonciling at EOFY.
There's also links to posts and Help Articles here: EOFY FAQs and Resources 2022
You can also try processing $0 pays with payment date as 30 June to update the YTD verification report. Wait until that report is accepted before rechecking the YTD verification report.
Please let me know how you go.
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