Hi Jasper1,
Thanks for reaching out.
Putting the employee payment method to electronic payments means that their payment would go through a loading account(electronic clearing account) before we could transfer it to the bank account where it's supposed to be paid.
If the bank feed transactions you have were allocated to wages and salaries I would suggest finding those transactions in find transactions and deleting them. Then you could go to "prepare electronic payments" and process the pay run transactions there to move into the bank account one by one.
Here is the help article Making electronic payments to help you with the process.
Let me know if you require any further assistance with this. I'm happy to help.
Cheers,
Genreve
