STP Phase 2 - Now have to manually input Salary amounts when doing Payroll

Good morning

I have recently updated to STP Phase 2 Reporting.  We did our first payrun on Friday and I have noticed that our employees that are on Salary come up with a $0 balance and I now have to manually put in there salary amounts, the amounts used to be there automatically.  Is there anyway to resolve this. 

Thank you