We have the same problem! I ran the ATO STP verification report last night and compared against MYOb and all good. All I've done today is update to the latest version and run todays payroll, and somehow the STP report is now LESS than it was last night and there is so much data missing!! I suspect something not quite right with the Compliance update!!
If you're correct, I hope we get it sorted quickly!
I think my problem may be more complicated than yours.
Keep in mind, (which you have probably already realised), the ATO report splits out categories of payments. Gross on the ATO does not include allowances, lump sum payments, pAYG withholding, etc. They are all totaled seperately, whereas MYOB gross includes everything.
