ATO STP figure different to MYOB

I was processing end of month PAYG and noticed the ATO had a different PAYG figure to MYOB.  I could see that one week had gone through as an 'update' with $0.  Now the PAYG amount calculated on the activity statement does not include that pay, even though there have been two payroll weeks processed through STP.  The MYOB payroll activity report and register report are correct.

I have adjusted the amount manually in the ATO portal for that activity statement but is there going to be a problem EOY with the individual employee tax statements?